Scaffold JGI25908J49247_10000004

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000004
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85387
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (66.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F019483	Metagenome / Metatranscriptome	229	Y
F076033	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000000426	F019483	N/A	MASGTGSLFIDFGAHPGSNEASVAVTGQTGISNTSKASAFVMAGDSSANHTPADHKYLPVFAALTCSTPVSGTGFTIYGTSTQKLTGQWAVRFVWSD*
JGI25908J49247_1000000433	F076033	GGAG	MAIAEIYNNSATIGTTEYDLPTNSTSAVSSQTAHGIYQLFLDLSALTATEEYRLRIYEKVRTTSTQRVVEEIIISGSQSPQPVLVTPALLLKNGWSYTLKKNQGTDRTIEWSIRQVA*
JGI25908J49247_1000000465	F004727	AGTAG	MKVTLSYHDTESFTVEEVVSQAIHNYGRQVKVEITPESTKAHDLIYFGLQQMVTHQQLSILYDKGNTYQSDLKKLRSEVLYKLEEILNQVIIDNESKVT*