Scaffold JGI26112J46591_1000798

Overview

Basic Information

• Taxon OID: 3300003269
• Scaffold ID: JGI26112J46591_1000798
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5992
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F016596	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26112J46591_100079810	F009300	N/A	MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIEEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN*
JGI26112J46591_10007987	F016596	N/A	MTNQYSLDKXRKSXNEFEALLRIYGVSNTLLSKVMVVNYATSXKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK*