Scaffold soilL1_10200660

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold soilL1_10200660

Scaffold soilL1_10200660

Overview

Basic Information
Taxon OID	3300003267 Open in IMG/M
Scaffold ID	soilL1_10200660 Open in IMG/M
Source Dataset Name	Sugarcane bulk soil Sample L1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1426
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location Name	Ayr, Queensland Australia
Coordinates	Lat. (^o)	-19.733298	Long. (^o)	147.17873	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004796	Metagenome / Metatranscriptome	423	Y
F102731	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
soilL1_102006601	F102731	GGAG	MPSTVLIVTNDHDEHATAVIDELQRRDVDVFRFHPEEFPDACSVSLEIVDGQF
soilL1_102006603	F004796	AGGAG	MNGRLPLPLELTKPVLLAGDLNTQLRDAVTAGGYDARTQLCSATHSSVRSKTLNFLGIQVDVNADVNVDDVIA*

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