Scaffold JGI26116J46587_1002097

Overview

Basic Information

• Taxon OID: 3300003247
• Scaffold ID: JGI26116J46587_1002097
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2399
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035480	Metagenome / Metatranscriptome	172	Y
F057667	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26116J46587_10020972	F057667	N/A	MGDLIVNHWQAILFALLIAARAIFSLVPSDNPAVKIFGWIDLIITALVGGDKRKNKKK*
JGI26116J46587_10020974	F035480	GAG	MSVTVTGTSELFKNIDKLAKWSVKDSKALQDVGHRVGAVYANYIKANVKDFATDIKGSNKGEEFIVKKGQLRRSGGTWQPNKKSNVIMSGPRTKAIGKRGKTKKNADGWYAHIVEKGDFGPRFGGKHRTQNTGVFSRGMKATTNRSLKLQEILLKKNFAKYTKKL*