NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26341J46601_10000288

Scaffold JGI26341J46601_10000288


Overview

Basic Information
Taxon OID3300003219 Open in IMG/M
Scaffold IDJGI26341J46601_10000288 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15251
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002913Metagenome / Metatranscriptome521Y
F003233Metagenome / Metatranscriptome499Y
F006672Metagenome / Metatranscriptome367Y
F018460Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
JGI26341J46601_1000028814F006672AGGAGMSTFETLPGESNAQIISSIINLVCPQCGGPMSEFQCDGRCRRNWLAEWEWANHATRSSKSRVSGHRARSMR*
JGI26341J46601_1000028815F018460AGGAGMLRRLIPVLTLCLATFPALCQSTSKYQIGFITDVKPRQSAGDGASDPATYDVSVKVGDTIYVVRYTQPLGEIPAKYATGHELLVLVGKNTITYNDILGRSLQVPIESQRAVAEHKDSK*
JGI26341J46601_1000028816F003233AGGAGMKPRQILIPMVMLATLWHTAGAQPKKRNIQAEAPPLDSVLASTSIQSKALLPDLIALKPKMPLGPQDVLKSYEIAMSMVADKTSADFSVIVQAQQANQITREQAEYLLQQIYEVAMMRYQVLGALHDVLKHDIDEASQEGTQSPRTSSASTVLVVPFPGSVSASR*
JGI26341J46601_100002889F002913GGAGVLGQLTGKPDGRTFILHLLNYDHQVSAENVKVRLEPSGLVNLRETKDLSGWEVKVLSPDAAQPQVAGLSLHGTVAEFTLSRIEHYTVVTVSAKTAR*
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