Scaffold JGI26339J46600_10016992

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10016992
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y
F012089	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_100169922	F012089	N/A	VWISDLYEKDGRLLVRYTVCNHGTEPYTIDTPLVYQLDGVRSTQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQLQTARVAPGQSTVGVVALDMASGTQPTVLRFQFPGSKQSEDGLSNGQQMQIAAFLVR*
JGI26339J46600_100169923	F010341	GAGG	MADPFTVKPVYNALNQYIRNRADIGASGAMRDGVLEPSNPFERKAARPPRRWFVLLSLLAAMVLGFFVYFNNLL*
JGI26339J46600_100169924	F004753	AGG	MNDQNDGNGVRPPAPTELGSDAREQIRDWEFLFWAFLLFGLGRLAWLYLYRPPNNAFHLGLSCGFVFCGVLGFLMRWVFSPKRGK*