Scaffold JGI26339J46600_10008689

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10008689
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2970
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F071884	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_100086892	F007120	AGGAGG	MKTLIIVLSAACAVIAYYFGLRYFTGQDLGFTPARKYVRNFVKNLLHTEITAAREAGTTPASTTEQSA*
JGI26339J46600_100086893	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVVFALGGTLVNAFMVTFIVPIWCRLSRLERR*
JGI26339J46600_100086895	F015428	AGGAGG	MTGILELFALVEIGSGIGFLATWRNRLLASKVNYFHPQHNRKSPIDKLVRAQTGPVITRQDHLCVKVADGLTLLVRRLVLLDAFRHLMRAVFLSNSRLRRSMRNKKKVSYG*
JGI26339J46600_100086896	F003859	AGGAG	MNEPNAEGTSIPGLSWPGANLYKSLKLGWRWRRLKWTVVAASEAAQGHEANGLPPGSREFKTLFNEVASKVQEYSTESGDPLDTLKARLPALCALERLANPTPTVPGSKAGLTLGILVAAFLGPIGIGALIGLGTGMAHWISHLFG*
JGI26339J46600_100086898	F071884	N/A	PRYRSLPGEGILDFNTDCASGQLEPGDIGNAPPPKRGRLCETCCFFAGIPEEQVPEMTLTLAAQDLVLVV*