Scaffold JGI26339J46600_10001643

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10001643
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7085
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006273	Metagenome / Metatranscriptome	377	Y
F088106	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_100016433	F088106	N/A	MAAHPVAIAPVPPALHVAPVGGVVSVHASPRPVAGGHRTPASSPRGTLRPASSPKPAVKPQPIPSTPVFTGASVAEDDLGAPGLGFDYVHYAAVHPDAGRNHFGGGVVPFVGGGIYVPYPVYMDNGAPAEPAAESAPAEAEQPVEDTAARPEPMAVRSHAHSNSPAEQDSEYVFVRRDGTVFFAVAFTFDSTYLRYITQDGLRKSVPLASLDLAATQQFNEQRGLSPRLPS*
JGI26339J46600_100016438	F006273	GGA	MSTTPTAIASTSDDNLFHRAKAFFGVALFLIIHRSPRLLQLHRNEKSWTFFRIALACSGAAIVILPLSLWNGWITASFGLLLFVVAILLPPAELESGTDRKARELGAQTVVSGGEYQPVNAPAAEVRLFISPTQIWALDAQFDPLLMIPTPDISSLRVEGRDPRWLLHVRWADHKAEFAYSSFFAERLARLAEQSIRAALPQELAATPKRRAVSAG*