Scaffold JGI26339J46600_10000154

Overview

Basic Information

• Taxon OID: 3300003218
• Scaffold ID: JGI26339J46600_10000154
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23848
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001567	Metagenome / Metatranscriptome	670	Y
F008141	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_1000015420	F008141	AGG	MAIGPAVRLVRQVQIAMVVSIALYAVAGEMLAGKLTHDPANTLFHALSFISISLVGATVVVRRTLVLPSEAALTQRSDDTVAVARWKTGYLFLYALCEVLGVFGLILRLSGFTLANVWGFYLGGFLLLLLYSPRAPRT*
JGI26339J46600_1000015421	F001567	N/A	MERSLIWIEGEANGWACSNCQWTFPVPTLLSGEEAMGAYHRLADVKFREHKCEAKTSFSAAKQVTEQDADTAFAERARMLIKRGYKPKVAVELVLHEILHETEIGQGNDPRIMERARADAEDFLLKVRRGLI*