Scaffold JGI26079J46598_1014647

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1014647
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2199
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020791	Metagenome / Metatranscriptome	222	Y
F022603	Metagenome / Metatranscriptome	213	Y
F061370	Metagenome / Metatranscriptome	132	Y
F077967	Metagenome / Metatranscriptome	117	N
F085331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10146471	F077967	AGGAGG	MMDPNKFWQDALDIIEKDNEVEQEHVSLDELYDEETSDNHRVEGIDNWEDWN*
JGI26079J46598_10146472	F020791	AGGAGG	MFKAIIFIAIGAVGAYLYMNPGDVDGSLEMLKQGVNKGATVIQEATQ*
JGI26079J46598_10146474	F061370	GAGG	MAKYTEDYSKMTDEQLVQTYNAVMANAYPGDECAIETEMQKRNLDENDFVFYGS*
JGI26079J46598_10146477	F022603	AGGAG	MQVHVLQLQGTGDDEYAYENAAVCANYEDAIERLAEINADYTDVDSAFFKLNENARIETHDLVDNNWGL*
JGI26079J46598_10146478	F085331	AGGAG	MIHYSTEVLDTFKHLTDECKDETRFTQDEMCFVLEFLADTLSGLTQVNSESLRDENAFIRMQDCSEVADNYVMLLNKHKRGDYVVVDGVYEQEDEYYTFTLQDAGAAICSYDTEYRECICEQFEDALNEYFERVEQNKTEKLDIANCLAWRIFNSY*