Scaffold JGI26079J46598_1007037

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1007037
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3663
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F015716	Metagenome / Metatranscriptome	252	Y
F016668	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10070374	F000375	GGAGG	MPKIYDLEPMIMDCWHVCDDIQVVFRQIGDGKRDPTQDELMNVLMGMQQLYQWKFEQLFNKYEDVLRDRQ*
JGI26079J46598_10070377	F016668	AGGA	MIPVGQLRLLLTKAGLDYVITRVEGNVAHVNILVAEQPDVHS*
JGI26079J46598_10070379	F015716	GGAGG	MNELGQGFFAGLFVMYVLALPLLYHMVEPEDEEMDNSGPIKFAFLWPLIALEVIYRIFVGEKDNDGTGPN*