Scaffold Ga0052186_10009141

Overview

Basic Information

• Taxon OID: 3300003154
• Scaffold ID: Ga0052186_10009141
• Source Dataset Name: Anode biofilm microbial communities from J. Craig Venter Institute, USA, in microbial fuel cells
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5506
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Bioreactor → Bioreactor Microbial Community From Anode Biofilm In Microbial Fuel Cells

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073725	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0052186_100091412	F073725	GGAGG	MEKRANRRHAIDTAIVCSHLATVGSSETVDGRMRNCCVNGIHAELKAGFKTGAILVVRATGSSRGYSQDEGFRSLALAEVKWSLRRFVEGNVCYATGLKYVMV*