Scaffold Ga0052192_1002368

Overview

Basic Information

• Taxon OID: 3300003153
• Scaffold ID: Ga0052192_1002368
• Source Dataset Name: Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2720
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine → Marine Microbial Communities From Deep-sea Hydrothermal Vent Plumes In The Guaymas Basin

Source Dataset Sampling Location

• Location Name: Guaymas Basin, Gulf of mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F016675	Metagenome / Metatranscriptome	245	Y
F084346	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052192_10023682	F016675	AGGAG	MKNFEVDYETTLPPWHIGHEKIEAEDLDTVKRMFHSKHEAARLRKITEVLFVAPL*
Ga0052192_10023684	F084346	GAG	MTFQTIRPRYQVETSKEQSMLSDKQQAEDIYQKYVNQKIPCELFLNGQLQKEYKPLI*
Ga0052192_10023686	F000615	GAG	VRRNQNNIVSGLERPVNIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV*