Scaffold Ga0052262_1090868

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052262_1090868

Scaffold Ga0052262_1090868

Overview

Basic Information
Taxon OID	3300003148 Open in IMG/M
Scaffold ID	Ga0052262_1090868 Open in IMG/M
Source Dataset Name	Algal bloom microbial communities from Baltimore Inner Harbor, Chesapeake Bay
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	684
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities Of A Harmful Algal Bloom From Baltimore Inner Harbor

Source Dataset Sampling Location
Location Name	Baltimore Inner Harbour, Chesapeake Bay, Maryland, USA
Coordinates	Lat. (^o)	39.283	Long. (^o)	-76.611	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016915	Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052262_10908682	F016915	GGTGG	VVNPHAVGDPHLVNVHGQHFDLMKQGVHALLHVPLMASRSKVLLHVDADAQRVGGACADTYFMSINITGKMVEQKIHALGRPSGTGLSYRAGTGAAHTGTKWMAFGRISLKVVHGRTKTGVAYLNFFARNLRHTG

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