Scaffold Ga0052235_1043964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052235_1043964

Scaffold Ga0052235_1043964

Overview

Basic Information
Taxon OID	3300003147 Open in IMG/M
Scaffold ID	Ga0052235_1043964 Open in IMG/M
Source Dataset Name	Planktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1465
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location Name	North Pacific Subtropical Gyre, Hawaii
Coordinates	Lat. (^o)	22.887959	Long. (^o)	-158.027466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F105372	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10439642	F004179	N/A	MINKEIILEVKNVYGNDLIYPSCHIANALIKLKDKKTFNKNDLDVFKSLGMNITWKARTI
Ga0052235_10439643	F105372	AGGAG	MWRKTIEWLDWNDARNTFPKWLWVMNGVVMGFAILVILFV*

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