Scaffold Ga0052235_1041542

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052235_1041542

Scaffold Ga0052235_1041542

Overview

Basic Information
Taxon OID	3300003147 Open in IMG/M
Scaffold ID	Ga0052235_1041542 Open in IMG/M
Source Dataset Name	Planktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1903
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location Name	North Pacific Subtropical Gyre, Hawaii
Coordinates	Lat. (^o)	22.887959	Long. (^o)	-158.027466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065851	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10415422	F065851	GGAGG	MPDNLVIPVHDAILPYMYEGVKWAIPNVGDNKETHNMAIARLFEKIGEHLQAFSVRTDCFVPGPPTLAAVKQHHNMFVRLCNLIDTNTKPDNMERLEAFHITHERRAFKIYPVRYFDVKNDYCRRWIELCLQGLSDIAQLSENTWANDWSDATGKEMKKLFREAYRLMCVELFRVPISTAHAVFSEENQFFLTSEDFLTYDVSHIPSIEWIKHPALGSQFTEDELRPIATPNVPVAPGVAENEGDTPQRELERRMQGGGEVVE*

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