Scaffold Ga0052190_102583

Overview

Basic Information

• Taxon OID: 3300003129
• Scaffold ID: Ga0052190_102583
• Source Dataset Name: Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI), Max Planck Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3222
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Integument → Unclassified → Unclassified → Olavius Algarvensis → Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy

Source Dataset Sampling Location

• Location Name: Bay off Capo di Sant'Andrea, Elba, Italy
• Coordinates
  • Lat. (^o): 42.807222
  • Long. (^o): 10.141111
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011565	Metagenome	289	Y
F099954	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0052190_1025831	F011565	N/A	MSTPKDLGNLLYHSAVVGGLTVGYSMVGKKLLKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKAT*
Ga0052190_1025832	F099954	GAG	MQAAPVRQQKDPKKQEAGRRGAEARRKKMEALKAELIAAKETVSETVPKEHAEQHVKPVVEQRVWERSEGTSGWIMGIGLATIIGAVMYSRLSAPLERRQPHGPQERNTVVTAQSAAVQPSRALFDM*