NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102679

Scaffold Water_102679


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102679 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3033
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084834Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Water_1026792F084834GGAGMANPVKGAISQLGDRVIDTSKGFFEAIRDAFGRESAGNTQIIKSEVQSFPSVPEPTVDNAPLMAVHNTSLEGVLAANEIGGIPSPSIGISDPANLQNFGEISLIMNPNKLSPNMNIYPTDAYTGRQPKGEVKIVNPKQFKERLKADVNLGHMADYAAIYLNKGDPEEADYTLKVINAAIDNNLVKPKDFNNIEALYEEAGRKLIFKFDYPLTEAQKYAGLSEYADVRRVLPPKDPYYDDGSRRPDKPYTAQTVLKDMRQGSYGPMYMPATEDYAQNVAGALRAATSRPFKSIDEVKDARGQIYVEERDQPSQSGDVLGDLFNTFHNVKFSLIDDLTNKFKKTEIRTRRSRNEDGEFVTTQEPITRMMGVETANELLLALGRNDADISRTAAVSEGFVSMDDIPALRDAVNRVGEIMQNAPTKYFEAKPNATMSLSDFDTALVPRNLTENEEVMRIFKENNLPVATYTDFGPNKDEYREGVMRQMKENLFSVPLAGTVGYGALQSVGEDDGESGS*
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