Scaffold Water_102569

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102569
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3109
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1025692	F055728	AGCAG	MRRSYDPRYGSREQLRDSAEHGMKVARERDALKAENAELHEQIKALIAYIEDIES*
Water_1025695	F013413	GAG	MTENEYDETFDMQMEREHQQTIARMQEFRMIGEQISKMPETSPKVLEIEVRYLMGIIGELEQRIKDLESEVRRFEMLVTRAN*
Water_1025696	F024785	N/A	VKPYTVNAAPVVQAPLAGMDTWLTRAVYHSNKSLWNNGSWIIRDVRGKPGTISNHAKGVAVDLSYRYNSSTNAGRTKSMPYIIKLLENSDTLGVQLVIDYALNRSWKCDRGTWIRGKFEAGDWYHIEVDPVICNSPELAKQAWDKVFGLIPAVVKKPV*
Water_1025697	F003213	N/A	MNNKKINKSHRQIGDQTTKGGLLGIFIYVLSRNNVDPVLIGLIVPVAASVLAWVSTKIGDPDLACIFIPDDKKAE*