Scaffold Water_102490

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102490
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3160
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F020173	Metagenome	225	N
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1024901	F054773	GAGG	MTKQENIISIVSEAVEKAWEGSSSAKEASEKYLVMLEQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLSKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE*
Water_1024902	F020173	GGA	MICTTCDGTGFIVLPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEEE*
Water_1024903	F004952	GGAGG	MNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLRQAHANLDDICKGIIVQNAVEDQRERTPWVAAYVQERRAARDVLAATYGLDDSERFAKDEDGNTVVVAEVGEPKPKPIDWADVQRKIISMLQSADVTYCETADISDVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRATLVLWSINADVYK*