Scaffold Water_101238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_101238

Scaffold Water_101238

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_101238 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4874
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034844	Metagenome	173	Y
F066584	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1012384	F034844	GAGG	MIKDYADEHTDLERMTCMCDHTEVDCFFDPYSQSLHFAYISGQLVTEMLRDQVIQNFERQYEKACLIELEENKLTVALDRYYAKQDYA*
Water_1012385	F066584	AGGA	MKHSKYIQHAIQGPFTSDKPTLVDQTIFWLSGFVSGLIFALLITGN*

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