Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_101015 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_101015 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5519
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5519

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F023580	Metagenome	209	N
F100703	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10101510	F023580	N/A	MNNIKLFLIRNYDSVEKASRIIGVTSNTVRNWCDNGGRNMLKHLPEISETCGATYAEIVEEVMIFEREGVE*
Water_10101514	F011489	N/A	MNSRHKKDWNNFLTRNYLKLRTIGRRWTENPSDLVHHVYLRCIDKDFPENALGYFIKAMYNEATRGKFKQLYHVTDNEPQEQASENDWAKAIQREQMQLLLDRLSWFDRTVFSLYLQGWNMADVSRRSGIGESTLYRSLHVTRKILKDVLRHRSEKE*
Water_1010152	F100703	GGA	MKIKISTRLVILTKTKAYKIPLDRRGWLQGVNEGKVWESHKTSGYLAPLLWSFGGFVCMRRIAPTDEIPPQLVAIIKATIPAFDITNCDLYRLENWGEYRGSRVLLDYGIDERISTMYS*
Water_1010153	F007366	N/A	MKLKETKLGKWFRDKSPDVLEAIGELVPGGELLKALGVLIDKSTESEEEKEKARVLLLELANADRASARNREVEVTKALGKRDYMQMFVGIAAMSIGIVLVAWAKSGVEDKEIFFHILGFAEGTLVGQVVNYYFGSSQK*
Water_1010155	F020174	AGAAG	MSEIKEDVLKYWEWAQEEFKGEDIDRLRFEVDSAIINLNRYINAEFKRKAMGKARMRTK*
Water_1010158	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEVQLESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDRMRLTKPGFGQGGQKNSPDIQKRIDASWAIGHAITQESDPEKILEAAEFLLSIRNTLISKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_101015

Overview

Ecosystem & Geography

Associated Families

Sequences