Scaffold Water_100854

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100854
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6046
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022833	Metagenome	212	Y
F037627	Metagenome	167	N
F049485	Metagenome	146	N
F102396	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1008543	F037627	AGG	MKPLICADCKWHIPSKQSSSVANYDRCKASEVINLVTGEAKHSYCESMRMSNGDCGMDAKLFELNQAEEETPNGN*
Water_1008544	F022833	AGGAG	MATKLQDSLVRKIQENRELKDTIKDLHTQAEKDKVFLREVQEESNNLELALKKCILSKAELNNKVEQLTDDLDKYTELYARATLVVTALGEAVYFLTKESNHGK*
Water_1008546	F102396	AGG	MLLFKTKRLERLEQEVVMLEDLFHSALQRISNLEEARWGLKVDGTPKAKPGRKVKDERIS
Water_1008549	F049485	GGTGG	MPDISTVERKIMENQKKPPFVPLEMKGRMTKNTYKKQGSSEPDWKGTFMYKGETITFGAWENDAGFGPYYNIKLNDPNWNKQQQQYPKEVTDKPAKSYPKDSDVPF*