Scaffold Water_100795

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100795
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6244
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053312	Metagenome / Metatranscriptome	141	N
F072378	Metagenome / Metatranscriptome	121	N
F095315	Metagenome / Metatranscriptome	105	N
F095519	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1007951	F095519	AGGAG	MRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYNDCINLGVC*
Water_1007952	F053312	GGGGG	MSYKVLNDAVGLIRDETPMWEGSYQELPDKTKDGLICLWLITHPTWMDDVFPHTVSDKPLLALEAIYSEDATSRMAAAMFRDAADRNAKDVDNDAYLSEALDDFEAILDTPDFLEEIRHQLYMYLEPSMEELVMDSYQDLIYLDRLVMGSH*
Water_1007953	F095315	GGAG	MDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
Water_1007955	F072378	AGG	MDSLNLTKSLEDCFDWELNDEIIRFDAIIESLMTTDVQRHKIREELIDWQDGVANMVDELSNVEPYEGFREFAAMAEEIFGTEQ*