Scaffold Water_100369

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100369
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10014
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064622	Metagenome	128	Y
F084834	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1003691	F084834	N/A	AANKIGGIPSPSIGISDPANLQKFGEISLIVDPNKLNPRMNIYPTDAYTGRQPKSKVKIKNTKQFKERLKADINFGHIADDTAKYLSSGALEDSDLDLRMVNAAIDFDLVDPKDFDSFGELFGAASRALRGDGRTARLVDNKELLSAYDGISEYADVGRVLPPKDPYYSDGSPRPYRPATLSTSLKDMREGTYGPMYLPASEYGSQNYAGALRAATSRPFKSIDEVKDARGQIYVDERDKPDFRTDPLEDLFSKFHEVKYSLIDDLTNKFKKTEIRTRRSRNENGEFVVTQEPITRMMGVDTANELLLALGRNDADISRTAAVSEGFVSMDDIPVLRDAVNRVGEIMQNAPTKYFEAKPNYSMSLSDFDTALVPRELTENEEVMRIFRENNLPVATYTDFGPNKDEYREGVMRQMKENLFSVPLAGTVGYGALQSVGEDDGESGS*
Water_1003693	F064622	GGAGG	MAGFWETYAKLSAPPMYDLSEADPEQIKGMGRTMLDSATIVGLGGEIEAGVRAPFSDKTFQEIDSEINQEQAAYKENYPAEYTAFSGLGMLPTIAVGAPAAVTRIVGGKVLPNVAFGTGVGGLSGFVGGTGEGESADQRLQTGKEEIAPMAVGTGVITAAMMGAMKAAPPVIRFFGNMANKVMGR*