Scaffold Water_100127

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100127
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17558
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F033796	Metagenome / Metatranscriptome	176	N
F036783	Metagenome / Metatranscriptome	169	N
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10012719	F030435	N/A	MNNQDILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGIKEPSKLYYSARTAMYEFVNVGMSKLSYPKGRSGRVASDDDVFEYVDAQDEQIPAEDLFGSYELKDSIEVLKKELSAKEWRLFMVLYNNNNSLTEASKVLNVSRQAVEQIRNNIRYKLVTICDLAI*
Water_10012720	F053299	GGAG	MSKEYKPYYRTDKRKQEELRTAKYISILFFTMIGFSFIGFSFVLVKAMLYMTGLFL*
Water_10012723	F059965	GGA	MPLPPSMEMELMELGILKSDIEELESVAEQTGFYAIRAETIAWHNTLIIDGEVMF*
Water_10012724	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGTEV*
Water_10012725	F033796	AGGA	MSSSNENKTYKVAGVHIGKKGVTVLDGKQRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQAEGSI*
Water_10012727	F086976	GGTGG	MSGDKIPPIDPVTGQFVTPLSGNKVYNTRQEVVEARISKEISTERFYELLGVYMEAYEEAPEYGFVGVGCISFAESMLQEHQDGVVRRIRIPTLYDEYSFKQESNDE*
Water_10012729	F036783	AGGAG	MLEIVRQKYGRHVDTRVYLDLGYGEMEVDIEEIEMIDGELSGTAYCHQRETEMYVDHKDCQRALDKYEEENNND*
Water_10012736	F065669	AGGAG	MKHRITSPLVFVDTLESFFGESGATSNIIASALGDYIAKNYQDYVGSFTDACNVRVILCLSYDLDLPPLDAIEWNIYVNHNASYLGES*