Scaffold Water_100117

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100117
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18221
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10011712	F003521	AGGA	MKSLVKDIRKYFNRRTKAIDAAKEADVNRKTLVIENGESAVRLMLNEDFALMFNLYRFNMLEKLEDSSTDLDRISNAHYVAGVRDFIDFVEKQEYLGKVAKKTNT*
Water_10011713	F004695	GGA	MLNKENVLVDHIEAPQGNKGVVFQTAHEAYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVNPGVDYATAIITKCLMPNGKVNFEFERFSEKDSKQAYQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPLREPVTQYKEVEGTKDQLRVFETMAAENGLTAKRQGMKRADVDLQAVMAGVEAGEVPEDSIDNNIIYKAEYKLTGYSTTVKVKHVAQHYFVCNPTIPNIQDQDFIGFYDPMTIHECKSQFPYVDLEKLAERAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKYSRVIMLTTAWLRKDVDNDGEEEIIEICFSGSYVLYIKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEYIDAEEIQRGVSAMFILDRKFDAGKHVFEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVMNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLANACAEGQPFMDAKSMENFEFIDRRMINIDLALGFLSDENRLTRQQLIIQTQTTFAQMLMQLDPSVPELFDKARRPFEDTLKVLGVKDVDAYLPTIQEAAKIAEAASKKGPSVQEQEIKSKTDLNNAKIEDTAANTAFTIRKTQDMDTDDMFEATAAKRGKLTSVQID*
Water_10011715	F006264	GGA	MEDLTNTFRQKLSGQAELCARKALEWLQKDLQNLQQLDPKDVYYLATAADILLTMRDKYGKK*
Water_10011716	F001059	AGGA	MATYDIESLKNDLPNAKDLAQYVYDKVGLSLDFIGKPKDEQYQVARNALEGKKVPQEYFTEVNPYLDKKELIPVDELKAIPPRSKDLPEEGSHTHVFVATNMPHPLDPQSDRKVQIRFRKYDNGAVTFQVNGPTEQIAIGERINKFGVKVPERYGWVDPRTEEILMKRADGTFTEKGRGLYAYCAGEKGGGIWPLIDKETLSMISRNITNPWN*
Water_10011717	F040590	GAGG	MNYGKVISGGKQMSKGLTKGINEKREGFQESHARSEMIANSVKKAFTQNPLSDPHLNNIKGGSFTKPKLPAKV*
Water_10011720	F001915	GGAG	MHEWTLMHPLYDIDDVVKLGEKLLKLEGSCLKTDPGYFRQYLTVASTNQIFDKTKEFLAVARTDELLGYCCFDRGGYATYSREEISNAKFHHVDLDLPVKTRVRLINDMIDQHLLWATKCGIPVVCSTSIRSEHDGFMKIHKKRGFTVNGSYAWIRTENATFN*
Water_1001179	F000857	GGAG	MELNLNNEEAKVNEDYYTKGILEGGIEGLLIKNDKMFNEVKSGTWSQTFNTKNIDYKIGSDNGTRYVQYDQKNVEAIKQGCKEKREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKYFNNRPWELIKMDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPSVPTR*