Scaffold Water_100061

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100061
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25483
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (91.89%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10006114	F001915	AGGA	MEEFSWRLAHPLDDVDDIVEMADTVFGQEADGILTRDRNVFRKHVTIASTVQLFDKGREFLAVCRDVDKLVGYCWFDRGGYTTYANEEISNAKFHHVDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHDGFMRIHKKRGFTVNGSYAWIRTENGLKDMK*
Water_10006115	F012670	AGGA	MKIPKPSDAIYGDIRPEDSNVTSEEEKQKKRDYYQRKKAEQKAMKLATGQQPPKEPRPEPNIGTSIPNMGRPKSVVNRVTEYGALFNKLNDERAAKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLQSLRKV*
Water_10006117	F099270	AGG	MTTNFQFAQAPNRKGNVSKHTASKSGGSTNITAAKHGTATPKGNQGAPKASGNVYPVGNKVSVNTHADYCGHIMNDGYMNKSVKNYGG*
Water_10006118	F040590	GGAGG	MSAYGKVISGGKAMTNGLTKGINKKLDAFADSHKRSATLAVAVRDTFNQNPLSDPHHNNVNGKKFTTPKLPSKV*
Water_10006120	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDKTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYLTDVNPYIDKRELIPEDDLPPLPERPADLPNIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVFQVAVGERLNKFGQRVPEKYAWNDPRTGETLMKRPDGTYTERGRKLFQYCSGEKGGGIWGLIDRDLTSISSKNIVDPWA*
Water_10006121	F006264	N/A	MEDQSSVFRQKLSAQAEVCARKTLEWLQKDLQGDRTLPPQDVYYLASAADLLLAMRDLYGKK*
Water_10006123	F004695	AGGA	MLDRQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGDQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDESEQVQNMQEEMSEAIRASTIYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPAKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFSQMMMQLDPSAPELFSKMRRPFEDTLRVLGVKDVDAYLPTMEEAAKVGAG*
Water_10006125	F003521	AGGA	MKSLVLNIREYFNRRTKNSDSHKEADVTRKALVIENGESASRLIKNEDFALLFNLYRFDLLGRLEECRTDPERIENAFNIAGVRDFIGFIEKTEFLGKVAKKSIN*
Water_10006128	F000857	GGAG	MDDEVKIDESYYSGGILEGGIDGVFRHNDKLYNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEVIRQKCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKREREDKILFYAIVNEHYSDFVCHPSGKIPIPYNPSIPTR*
Water_10006129	F005087	AGGA	MALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSALILVGDFIGPNMMGPFAAVLAVSSTTITVNDPDAVWTGVTYPTTILKLPSASALEIQACIQMAELKMRTIELPALRSDPYATVSPSTLTTNAQGMAPIPSDMCFPILFFQESPPSNQAPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK*
Water_10006133	F012214	GGTGG	MSDYQRLRTPFPQMSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIYGEQDILSTIPNFPIFMDGGFRTEGQWIYIVATRDSSDRGRWYVITTAGITNVTPGIGGNPSAYLTGYTENINITTSWVGGVFFINDGLASPMYLLPAAVPYEIYKYDAAPNNYIWNYDIGVSGTRAAFVRNFCSPNVGNILIAGNLTKDYTSSGLTINYPTTVRWSQAFANTGVPATWEPTLSNVANEQEIPVRGPIVDGFFLGGNFYICSYWDTVVLSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFRNLSTTYSDRIFMINNTQKNQIEIYYPDLTSSGWCNKMLSYRYDLQIWNAPKDIGNACMGAEAPVYTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINGEPIPALFERNNMVLQGNQGPVPYSSKVYIHRLLPEIAGTGAIDITVGGSNSTAQPATYGQTGHVNIVTDNPWVTTQQNNVRTISVKVESNDATDAWNLTALNWQATVVEDAF*