NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LBH21_10016480

Scaffold LBH21_10016480


Overview

Basic Information
Taxon OID3300002927 Open in IMG/M
Scaffold IDLBH21_10016480 Open in IMG/M
Source Dataset NameDelisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_H21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1894
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Delisea Pulchra → Delisea Pulchra Microbial Communities From Sydney, Australia, Affected By Bleaching Disease

Source Dataset Sampling Location
Location NameLong Bay, Sydney Australia
CoordinatesLat. (o)-33.57Long. (o)150.15Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056191Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
LBH21_100164802F056191N/ALTLNNLYDVARVRHVLTAEMSETLLSWGSMHASVKLEGIDGRAPQERVEHVA*

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