Scaffold Pfgo_1078224

Overview

Basic Information

• Taxon OID: 3300002925
• Scaffold ID: Pfgo_1078224
• Source Dataset Name: Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2931
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.9766
  • Long. (^o): -110.7016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023603	Metagenome / Metatranscriptome	209	N
F054062	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Pfgo_10782246	F054062	N/A	MGTLRQLRWKDFCEGLEKDPPEDVQKEAERIFFDHVFPEAVLTFFQNASELLLLYEASLSAPAMRPIADAKFEELFKQNPIPFYESLVPVLKNLGADPEHATFLEICAFLTTYKS*
Pfgo_10782247	F023603	N/A	MLYTTADFAGQYRLDSNAITQTDYQNAIDEHERTLLEYFFDAGSVGKIYAVLPTQPPAVGVRNMMRDLALPFIFGRIKMGVGSSMAGEPHTQGYTRIGYTPFLAWRGSDTLRKLIRFAPFVVQAELTSPAATIPYPSPIPQAPDFVAIGDPVTAYTSSGEVQTTVVGVTAADITLAATLPIGPVRLIVENLRLRLMQVYMTF*