Scaffold Pfga_1079670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Pfga_1079670

Scaffold Pfga_1079670

Overview

Basic Information
Taxon OID	3300002920 Open in IMG/M
Scaffold ID	Pfga_1079670 Open in IMG/M
Source Dataset Name	Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Illinois, Urbana-Champaign
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1138
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs → Hot Springs Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone Mammoth Hotsprings
Coordinates	Lat. (^o)	44.9766	Long. (^o)	-110.7016	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041729	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Pfga_10796703	F041729	GGAGG	MSRVFNGKVSIVLNTKGEIALKRDSEGRFSAENATEIYETMLKLAKARKATINKYSLFRTESGKIPVLLANRYGNPYIALLPEKAENGVSVPKKTVTKLA*

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