Scaffold JGI26061J44794_1024710

Overview

Basic Information

• Taxon OID: 3300002919
• Scaffold ID: JGI26061J44794_1024710
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9728
  • Long. (^o): -44.9905
  • Depth (m): 5110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26061J44794_10247101	F061282	N/A	TTNMGSGNIATRGIPLLKKPPKGLVMKRFGGIDVFALDPTYFQKSRLGKKKYTRYSGYVGEDEAGDYIRAFARKYPKKPIIVMDSQTGCMQYLRHGS*
JGI26061J44794_10247102	F001334	N/A	MKFKEYLQIYADDSIEQIMSGEWISKSRSTWKATDDEDNSLEIHNDGHDPELNGESWTVHKNTFASKAFAHFCKQFIEKVRPAELSYARTRIYPSTSN*
JGI26061J44794_10247103	F003285	N/A	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKTSDXEVRDELKILHTRIGDLHDKCTEMIDKTETRISSDISLLYKKVESLERWRWITIGVATVIAWLLTNIIPKFLSN*