Scaffold JGI26061J44794_1024244

Overview

Basic Information

• Taxon OID: 3300002919
• Scaffold ID: JGI26061J44794_1024244
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1301
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9728
  • Long. (^o): -44.9905
  • Depth (m): 5110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038275	Metagenome / Metatranscriptome	166	N
F049042	Metagenome / Metatranscriptome	147	Y
F080148	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26061J44794_10242441	F080148	N/A	RIAEIDARIGVPVYANSTHASGTTPAXXXXPPCIRVKTIPTANATSGYVPYGREIYDNVNLLLGGDVDLLGGIIKDIESLGDLVDLVKNARNKYEIYNGRAKEY*
JGI26061J44794_10242442	F038275	AGGAG	MAHPTGKWAEAEIRRDDIKDLMEKTKKLATMYSELLKIKREGWENVLRAQVKREAKEKEKQNG*
JGI26061J44794_10242443	F049042	N/A	MAEFQALQTATAEWKPHQIAKAGDIASMAEAAGALAEVVKETLSLASAGMEVVKLLAQLQSINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIKNVAAEPAFTYGFEXLRNKGGDRLWLAKDLSDFGTGEYAQTTTTPTQAQLDAETVIPHLVTPRKMIPGGYNPYEGKGVADPLAAMSPFPKFSVQNVITEFTKAFDDEGDVPRYRRVGVAPKAGVVVYDKDGNSYSGWDPVKEFGLELYDIGKDQEDGSIIKDYKAARK