Scaffold JGI25616J43925_10004684

Overview

Basic Information

• Taxon OID: 3300002917
• Scaffold ID: JGI25616J43925_10004684
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5822
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018212	Metagenome / Metatranscriptome	236	Y
F025819	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25616J43925_100046842	F025819	N/A	MLAAVLVCVFAGTANAQDNRVFDWTPANGETIPMEPASLHAGRVYHPAAGGGNMHIGIESRYPVTIAMAWADEWNAAMQHPDASANFSFLCVKEHVTNLIYECHLPSERPMIITFHDERRPEKPVVSTIRAILGPGTQQFISPNDLHIQYYSWNCVDNCILPEFHWRRILNEKYEVTPAPKVYSLMTPDHDGQELSVKIKSPIPLTVALLPSHLADQVYDKVVSLTDALDQTGCKERGVQSMSFNCSFNVANGPQTLFILPDISFSGHKKAGVEVNTVKCVEHCDLLNPAVNP*
JGI25616J43925_100046845	F018212	N/A	MLFANVPLDCQFLLLVMLAPAFGPLAMARTAQPGAMRCMRRPLPGHPAQPAMQCHHAMAQSRTPQPEESGPSFQAVANCCLNHDCCCRVATLEWAHPAFSLLSFFRPLIEPARTQQRGILLSCDITGHDTARAPPRS*