Scaffold JGI25616J43925_10003177

Overview

Basic Information

• Taxon OID: 3300002917
• Scaffold ID: JGI25616J43925_10003177
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6875
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009375	Metagenome / Metatranscriptome	319	Y
F056369	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25616J43925_100031772	F056369	N/A	MIDSEVTRLRRLRNTALRARAVAATLDSEPARRDSVFSRGAVSCWQIARIITGLLRAHPYLSYQRGPSEVRGVYDRLSAGLLGGIARYRGRSHQTFSDELRRVARELDDARALTWSSDLSDTLGRSQIQIRGLIKELGAGALNESGSRHETAPRVETRIGAVRDDSGSVAGNWPYLAI*
JGI25616J43925_100031774	F009375	AGG	MGAVTMGKRQEIAIGIALQTQVLKTCPIHNQLYCDERSTDDENMARAFAVAVELVRQHQPYAEEFHHDPHELTDLLSYTIGAAPASCPDCVSQRYSLKEEGAPAPAGA*