Basic Information | |
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Taxon OID | 3300002914 Open in IMG/M |
Scaffold ID | JGI25617J43924_10011305 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2925 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Laytonville, California, USA | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019891 | Metagenome / Metatranscriptome | 227 | Y |
F050601 | Metagenome / Metatranscriptome | 145 | Y |
F057937 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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JGI25617J43924_100113054 | F057937 | AGG | MSKVIRTFQNAKKEEVGRLTFDEKDDRLHLQSPAPPGIDRRFRTEKGAANWWKSNVDPETGKIRR* |
JGI25617J43924_100113055 | F019891 | AGGAG | VSDWSKDAARRFAAQQKAKQIQDAKVIRDQNDFALNMAKVWADLCELFEARCAEFNAEPGVAGILSCDTKRTQEFKITXTDNAAMLRGTFNAKRHTIHFMGPNIGKEKSEIKIEVIEGSSQMRFVDNLQRILYPQDIVDISLIDLLQLN* |
JGI25617J43924_100113056 | F050601 | AGGGGG | VHYEQQKAMQRELNERIPPAPKGDPQNELRQVVNSQRFHGKSFDQSVTIAVSVIRKRYPLFTPRIL |
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