Scaffold JGI25617J43924

Basic Information
Taxon OID	3300002914 Open in IMG/M
Scaffold ID	JGI25617J43924_10001448 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002914 Open in IMG/M

Scaffold ID

JGI25617J43924_10001448 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6145
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6145

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011415	Metagenome / Metatranscriptome	291	N
F013549	Metagenome / Metatranscriptome	270	Y
F039961	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100014483	F013549	GGAG	MKAGRLIRSAIAALVAVLVLPASALAEAPGNEGGTVNVGPVSKGPVVSQGSAGYDPNGISATASTQPTGSGTTXTAPSYIYRPVPGNSVPGACPTQNNGLVSNPCAGIPTSACPPAQTGYYVYDXNGNALGLVCVPNPTDSLLPPTTPEIALADXASSRQPWPXLEFGINPTAGLTGLPSWFWLSGSAAMPDAVASSGPLTVRVQARLAGVSWEFGDGLGFDSVDLGQSYPVQSDIQHLYQTDTYRLSNGYTVVAILRYLVTYSVNGGPWNTLGVKTRPFSQQYLVYQLQPEAVAGQ*
JGI25617J43924_100014484	F011415	AGG	VLTKPARARGFQMRNAVLGSRTRTGLAAAIIVLVLGTVGVLGATGRLGDLRYANVPLIHPWPPSGYYQNPFNPTDRGDLVNASEAAKVKSDLVADGQIELQAYRASDGSLLDGADTGNRLVKLGAALAQNHAAGVSESFTNHLTSVRVGRLADPNVASVTWCVEEIGTSRITLTNTANGQTIRLYTIRFDDKFWMVLVGGRYLITDAEVQSETIS*
JGI25617J43924_100014485	F039961	GAGG	MMRFVDQIHEAFRETVRSGSLVGVDDLPSRLRLWRAPAETRDRMWSQVLRDYIEGPRGAWATIILEALCPDLVITIAAMPAMPPAITHDEVAQQLITELLAAALDGPTEPARWSPNRLLSTATKGTYRWLAREIRSLSQSTGDLDRRATDAAGHEIPGLLAELEARTIPSAGLIILYRQEVLGEKLADMAAESGLSANALRLRRRRAIERIRKELAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25617J43924_10001448

Overview

Ecosystem & Geography

Associated Families

Sequences