Scaffold JGI25386J43895_10028662

Overview

Basic Information

• Taxon OID: 3300002912
• Scaffold ID: JGI25386J43895_10028662
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005023	Metagenome / Metatranscriptome	414	Y
F036632	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25386J43895_100286621	F036632	N/A	RGGAVALSADGRHQLHSQWLVWHHDPGARAKAGAAGKRLVREGRGAAERTTELVKRLVEAGGS*
JGI25386J43895_100286623	F005023	GAGG	MKRTALTLALGLLATPAAAQWLGEPMWNDPTAGTGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVASWDPDLVSQRLLSVGGTVGFRLIGGSLIPVAVNLQLGGGHSFEVTSSTTTSPLQTMLHAAVGXSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPDHEVHFGWVIGGNVGVGPIGIHVAYDSEKFDDGTTHGVFGIGANLGLRP*