Scaffold JGI25386J43895

Basic Information
Taxon OID	3300002912 Open in IMG/M
Scaffold ID	JGI25386J43895_10011006 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002912 Open in IMG/M

Scaffold ID

JGI25386J43895_10011006 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2584
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2584

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015192	Metagenome	256	Y
F042245	Metagenome	158	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25386J43895_100110061	F042245	N/A	LIRFTQKFHALGVQGVSASIWTYRIDDGSCVFLSDHTSDATRSSDESIENVVATINQVLVDGGEKNFTATGADDLGQQGFGTATINYGACDFWEPRQYRFEYIHDDRASNVDFVNIRDVPIRDESGSLFYHTSFEVPIRLSKPQAFILQFSIRPEADFGSETVVPALVYSLFQGTDFPATPPSYQNLAVGAAIDGHAYAFQLRIPETVAREENVVRRDGMPMATLVLMPMWLDTHATRVTRFALNATLVSTAAAIARVHEGAETIVARLSTDMEALESSLPDSGSGLTTGFHSFGDFSVYVYRTGDPFDSEAPATADAIYLLGDSPEQVASFQDSITWAPEGEWLRKSEDGFGVALRVFKIIRQGISITSQLTASILVPVLNVPSGALEEMTFGRSTFTITKLTNLETDQPYYVIGETATQTVKVRVAHPEIPGVTLTEVRLIEREIQGEIVDDLDDSRLLTGVKYAQLRSALRGAAIGATLVIFGSQAVLAFRDGDVVKGSVYVLAGATAVFGIVRSDTVLIRGLFKGQLLGAGLKIRLGVAAAIAVGGILASYEVFQASQADNPINRLSHYESAGTIVVDTIIAVVPLYGAAAMLGWQLGLTIAVGAEALLGIMPNTLAVQIVSTPGSTITFLFEYIFGSEIPSSVAEDALIRLLNELAAEARFLNSIDPPVPTLLLVP*
JGI25386J43895_100110062	F015192	GGAGG	MGGLITESDEKILMATTGWDAEVCSPWRRFLPKIIFAGFGGQASSKLFVTTKRLVIVRDIDTWRELKGELTPLGVPTAAAKEARLRKLKSLGVHQYCEIRPQTLRVVKKRSFDRRQSWIDLHLIGTDGKQYAVTLWKTDGPDQDTRTLIESQFR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25386J43895_10011006

Overview

Ecosystem & Geography

Associated Families

Sequences