Scaffold JGI25388J43891_1005402

Overview

Basic Information

• Taxon OID: 3300002909
• Scaffold ID: JGI25388J43891_1005402
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2557
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032356	Metagenome / Metatranscriptome	180	N
F040668	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25388J43891_10054022	F032356	AGGAG	VAPTSPPFANDTAPHRNAGDLSNDYRARRALEEEERAQRRRIDLEEQRSDLNPPKVRIRAWEKVHGLRLPADSTHPILEVIATDTRLTLAEVREEQQARAAESTARK*
JGI25388J43891_10054024	F040668	GGAG	MPAPYHAEEKFHEALRALVGAASQRKRLESAYLDNLSDLQAAELPISQQAKFVRLRDTLTHGKQLDAEIAIEAMSDEEVAEAVRQILALYDGIMDAARSGPVPNSAGRAQSRSA*