Scaffold JGI25388J43891_1002860

Overview

Basic Information

• Taxon OID: 3300002909
• Scaffold ID: JGI25388J43891_1002860
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3569
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004121	Metagenome / Metatranscriptome	452	Y
F062562	Metagenome	130	N
F068177	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25388J43891_10028602	F068177	GGGGG	MPNSDSEELRAELLSLLDKQFEVLELSTCVTLTDEEKXEYEAXKQRIHELFKQLGTFRAAA*
JGI25388J43891_10028604	F004121	AGCAGG	MVGRRNKVLAAAALWGACAWFLSLDVDFLITNLRSAPHWLLQVFRALFMGVSVAVGYVIYRKYLLEIRTRGEKYAEIRVQIRRLLADLLTTPDEDLIRQLHRAIRHIEQVLKRYDPEAADLGGKLKKPSVRETQASLYESEQSGNSSADAKRARSPRY*
JGI25388J43891_10028605	F062562	GAG	MPYQKFRKLFEQRPEPSRWQRITLGSPIKWALAGGLCIIAVLLVR*