Scaffold JGI25614J43888_10000151

Overview

Basic Information

• Taxon OID: 3300002906
• Scaffold ID: JGI25614J43888_10000151
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19516
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025234	Metagenome / Metatranscriptome	202	Y
F060162	Metagenome / Metatranscriptome	133	Y
F082997	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25614J43888_1000015114	F060162	GAGG	MSMDIEWQDLYRAALLELRPDELRRRIDDAEKAIQQRIVELGRDESSSDEERRAIDDALRGLRVLASLECKSAISNKTRTTPLPS*
JGI25614J43888_1000015118	F025234	AGGAG	MRKDDLMNADLFSEILLLGSGVAIAVTLVMVIVAAVTSAAALLQ*
JGI25614J43888_100001513	F082997	GGAG	MAVSTPAAYGMYPHDVELHQVVQTLNQSGIGKEDICMMVSPSHPFATIVREANNLSAEPRASATAAGLIGWFMKFGAVMIPTVGLYIRSHAFLHALGVRKDSPALRGNSRTLVGLGFSESDALRFERQLREMGVLIYVACSESEKTTRAIELLRRTGARETATVEKEVALEAVA*