Scaffold JGI24804J43974_1000190

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24804J43974_1000190

Scaffold JGI24804J43974_1000190

Overview

Basic Information
Taxon OID	3300002897 Open in IMG/M
Scaffold ID	JGI24804J43974_1000190 Open in IMG/M
Source Dataset Name	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um Nextera
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4102
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location
Location Name	Manhattan, Kansas, USA
Coordinates	Lat. (^o)	39.214	Long. (^o)	-96.5852	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029836	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24804J43974_10001904	F029836	GGAGG	MKKLNSVFGVLVLSVVVLLFASARESAAGQSEYYSRGGDGILRMKHSPVLGINIPIAVWIDGRMSGAFTKGHVYERSLAPGRHSLYASRPGQLYSSFYGTLDVRPGEVYSFVVKSTPNQVYLIPSRID*

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