Scaffold contig_10401

Overview

Basic Information

• Taxon OID: 3300002844
• Scaffold ID: contig_10401
• Source Dataset Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Source Dataset Sampling Location

• Location Name: USA: Williamsburg, Virginia
• Coordinates
  • Lat. (^o): 37.251274
  • Long. (^o): -76.791915
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F035757	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
contig_104012	F003331	GGA	MSLSEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWNQFDTEKRKPSGVY*
contig_104013	F035757	GGA	MMNKYAVILSSLVDGATVRVQFLANSEMTAQQLTTYYKCKSVAISDVEVFELCL*