Scaffold JGIcombinedJ43158_10007455

Overview

Basic Information

• Taxon OID: 3300002839
• Scaffold ID: JGIcombinedJ43158_10007455
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A and 11-33A (Combined assembly, ASSEMBLY_DATE=20140611)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5144
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow, Alaska, USA
• Coordinates
  • Lat. (^o): 71.290884
  • Long. (^o): -156.788063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096256	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ43158_100074556	F096256	N/A	VWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAIXKFTQVTPKTYVGTYADEKGQSWXFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*