Scaffold B570J40625_100309004

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100309004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1596
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F095357	Metagenome / Metatranscriptome	105	Y
F095358	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1003090041	F095358	N/A	ADKLGLNMDLGGEVIQETIIDWMIDKEFLAILEDDGWLDD*
B570J40625_1003090043	F001019	GGAGG	MNYGPTLEILEVEYSCSPGGVDTYEVYEIDHLPMDCPVYETESLTDAVKFCYNLGQDFIVRTVAAWHRNEEAYA*
B570J40625_1003090045	F004666	N/A	MNMITKGSITMATKREYLASKGITVGRRGRFSSAAMKAIQDAENQGIQFTAEKKTPKK*
B570J40625_1003090046	F095357	AGGCGG	MATSKEIKLGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVLWIIEKNAGVYKDKAGHQEVSEGLVIAYKLDQLVDRIKQSNKFNHIRIP*