Scaffold B570J40625_100170799

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100170799
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2427
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020323	Metagenome	224	Y
F042221	Metagenome	158	Y
F051781	Metagenome	143	Y
F056421	Metagenome	137	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001707992	F042221	N/A	MITEDDEFERIEREIKWRLDSTRSTVVADDYYWIPIDQDTPTSMKILLLGRSGVATMGHYEHTPGTQFWQFWAPLPRKRP*
B570J40625_1001707995	F056421	GGA	MNDDEVEGLFAWGWLDLALAVILTLLAIAALFFAAGYLT*
B570J40625_1001707996	F051781	N/A	MSILDEIKVNRTPSHMVRFAALGLQKQTKRIMGEYVERQKQPGEVKAADNDLWRRGHYKTGDGDYTAQVPRVGSLVAFSLPSKGNRT*
B570J40625_1001707997	F057202	AGAAGG	MTITQQFKRITRRLTPVEMAATELAEAELHRLEAHSAVEFATSMVAYEDARIKRLRKFLTDAEKV*
B570J40625_1001707998	F020323	GGAGG	VNRLTQLKARLKAAQAELLIRTRTHNSASRAYNKVVAHIAELEKRIDNLAKISSGS*