Scaffold B570J40625_100161175

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100161175
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2530
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F029721	Metagenome / Metatranscriptome	187	Y
F038643	Metagenome / Metatranscriptome	165	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_10016117510	F000447	AGGA	MGFIEFARIDENGVEWVNLENATNDELLDFEIALFQEGAL*
B570J40625_1001611753	F038643	AGG	MTDTTNWAKYPFTVDGVEFVSLLDPNGSMYQQVSRIPASLFTTMNEGAIREIVGKVSLMSKSEIQAELDRVNDGYSQAYLALA*
B570J40625_1001611758	F091432	AGGA	MDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNNERKEN*
B570J40625_1001611759	F029721	AGGA	MRTYSIEDLLVGQFYRPTSYARRFFGGEINFAEKRDDVWVGTDYQAYSIRYRVGQSVKNEWATIAVKVADL*