Scaffold B570J40625_100113896

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100113896
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3259
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001138962	F050892	N/A	MAAQRCDASQIVMGWAVSWQTVANRGRFWRRATPVRSPIPVITDPRHRELLQRAIDAQTVVADELQSAYNARMALPIDHPQRLETRDLWRDSKALEALISGAHGLLTGNAGAVTLQGRSQS*
B570J40625_1001138963	F100355	AGG	MTKPIPKRRPSPGKRVTGAIYDGVGNSVVVDAYLPADAYEQVKRLQEQTSGTQAAAFRSLIFQGATSLGFKDSVSAMEAVAAANGGASDARAVHHLIRLGAGLNPILSNPTP*
B570J40625_1001138964	F102508	N/A	MNRLSDRVSLAEFLDIKRLDATMYHLGGLRASWRAMARPQRIDALRVAALSLGNIADRQLPAGERRTLGQPTHYKLMAVLALIASALAYTVGVEQGRARCPLGSAVAQTVVQ*