Scaffold B570J40625_100107449

Overview

Basic Information

• Taxon OID: 3300002835
• Scaffold ID: B570J40625_100107449
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3403
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F008996	Metagenome	324	N
F018160	Metagenome / Metatranscriptome	236	N

Sequences

Protein ID	Family	RBS	Sequence
B570J40625_1001074492	F018160	N/A	MVVWRMANKDVLKFDAIFAMKAVEFLNYALLIHDILEAERMEAERMRRR*
B570J40625_1001074493	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
B570J40625_1001074495	F008996	N/A	MKLLANIAYHHHPNRVENLTKVIEAIKSYPVQSDIFVDTNDPQAAQELAHLPVTFHAHTAMGHPWELTSKHRNRIAEVYRHFDWVAYFEDDMMLPKEGFINFTKQFDPMFEDNLYPSFTRIETYPNVEGEFSPDIAFNPTPNMWKDWNGKTYASLPFYINYHAFWMFSTKRLAEVLSRNPQALQTIPNNGLYRESLASLPIWSLELKPMLEMDENGELADHCKVYHLSNNYRDNSRNIKEIFKR*